Pirt
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Reference:
pirt.gaussfun - Gaussian diffusion
pirt.interp - Interpolation functions
pirt.deform - Deformations classes
pirt.splinegrid - Representing data using grids
pirt.reg - The registration algorithms
Anisotropic arrays and pointsets
pirt.apps - Simple demo apps
Pirt
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Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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M
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N
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O
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P
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R
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S
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T
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V
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W
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Z
A
Aarray (class in pirt)
AbstractRegistration (class in pirt)
add() (pirt.Deformation method)
(pirt.GridInterface method)
angle() (pirt.PointSet method)
angle2() (pirt.PointSet method)
append() (pirt.PointSet method)
apply_deformation() (pirt.Deformation method)
aproject() (in module pirt)
as_backward() (pirt.Deformation method)
as_backward_inverse() (pirt.Deformation method)
as_deformation_field() (pirt.Deformation method)
as_forward() (pirt.Deformation method)
as_forward_inverse() (pirt.Deformation method)
as_other() (pirt.Deformation method)
awarp() (in module pirt)
B
BaseRegistration (class in pirt)
C
calculate() (pirt.ScaleSpacePyramid method)
can_resize (pirt.PointSet attribute)
compose() (pirt.Deformation method)
contains() (pirt.PointSet method)
convert_local_to_global() (pirt.interp.SliceInVolume method)
copy() (pirt.Deformation method)
(pirt.GridInterface method)
cross() (pirt.PointSet method)
D
defined_origin (pirt.FieldDescription attribute)
defined_sampling (pirt.FieldDescription attribute)
deform_backward() (in module pirt)
deform_forward() (in module pirt)
Deformation (class in pirt)
DeformationField (class in pirt)
(pirt.AbstractRegistration attribute)
DeformationFieldBackward (class in pirt)
DeformationFieldForward (class in pirt)
DeformationGrid (class in pirt)
(pirt.AbstractRegistration attribute)
DeformationGridBackward (class in pirt)
DeformationGridForward (class in pirt)
DeformationIdentity (class in pirt)
DiffeomorphicDemonsRegistration (class in pirt)
diffuse() (in module pirt)
diffuse2() (in module pirt)
diffusionkernel() (in module pirt)
distance() (pirt.PointSet method)
dot() (pirt.PointSet method)
E
ElastixGroupwiseRegistration (class in pirt)
ElastixRegistration (class in pirt)
ElastixRegistration_affine (class in pirt)
ElastixRegistration_rigid (class in pirt)
extend() (pirt.PointSet method)
F
field_sampling (pirt.Deformation attribute)
(pirt.GridInterface attribute)
field_shape (pirt.Deformation attribute)
(pirt.GridInterface attribute)
FieldDescription (class in pirt)
forward_mapping (pirt.AbstractRegistration attribute)
(pirt.Deformation attribute)
from_field() (pirt.DeformationGrid class method)
(pirt.SplineGrid class method)
from_field_multiscale() (pirt.DeformationField class method)
(pirt.DeformationGrid class method)
(pirt.SplineGrid class method)
from_points() (pirt.DeformationGrid class method)
(pirt.SplineGrid class method)
from_points_multiscale() (pirt.DeformationField class method)
(pirt.DeformationGrid class method)
(pirt.SplineGrid class method)
G
gaussiankernel() (in module pirt)
GDGRegistration (class in pirt)
get_cubic_spline_coefs() (in module pirt)
get_deform() (pirt.AbstractRegistration method)
get_deformation_locations() (pirt.Deformation method)
get_deformed_image() (pirt.BaseRegistration method)
get_elastix_deformed_image() (pirt.ElastixRegistration method)
get_end() (pirt.Aarray method)
get_field() (pirt.Deformation method)
(pirt.SplineGrid method)
get_field_in_points() (pirt.Deformation method)
(pirt.SplineGrid method)
get_field_in_samples() (pirt.SplineGrid method)
get_final_deform() (pirt.AbstractRegistration method)
get_level() (pirt.ScaleSpacePyramid method)
get_scale() (pirt.ScaleSpacePyramid method)
get_size() (pirt.Aarray method)
get_start() (pirt.Aarray method)
gfilter() (in module pirt)
gfilter2() (in module pirt)
GravityRegistration (class in pirt)
grid_sampling (pirt.GridInterface attribute)
grid_sampling_in_pixels (pirt.GridInterface attribute)
grid_shape (pirt.GridInterface attribute)
GridContainer (class in pirt)
GridInterface (class in pirt)
grids (pirt.GridContainer attribute)
I
imresize() (in module pirt)
imzoom() (in module pirt)
index_to_point() (pirt.Aarray method)
insert() (pirt.PointSet method)
inverse() (pirt.Deformation method)
is_identity (pirt.Deformation attribute)
K
knots (pirt.SplineGrid attribute)
M
make_samples_absolute() (in module pirt)
meshgrid() (in module pirt)
N
ndim (pirt.Deformation attribute)
(pirt.FieldDescription attribute)
(pirt.GridInterface attribute)
norm() (pirt.PointSet method)
normal() (pirt.PointSet method)
normalize() (pirt.PointSet method)
NullRegistration (class in pirt)
O
origin (pirt.Aarray attribute)
(pirt.FieldDescription attribute)
OriginalDemonsRegistration (class in pirt)
P
params (pirt.AbstractRegistration attribute)
pirt.apps (module)
pirt.deform (module)
pirt.gaussfun (module)
pirt.interp (module)
pirt.reg (module)
pirt.splinegrid (module)
point_to_index() (pirt.Aarray method)
PointSet (class in pirt)
pop() (pirt.PointSet method)
progress (pirt.AbstractRegistration attribute)
project() (in module pirt)
R
ravel() (pirt.PointSet method)
refine() (pirt.GridInterface method)
register() (pirt.AbstractRegistration method)
register_and_get_object() (pirt.AbstractRegistration class method)
remove() (pirt.PointSet method)
resize() (in module pirt)
resize_field() (pirt.DeformationField method)
(pirt.GridInterface method)
S
sample() (pirt.Aarray method)
sampling (pirt.Aarray attribute)
(pirt.FieldDescription attribute)
scale() (pirt.Deformation method)
ScaleSpacePyramid (class in pirt)
set_params() (pirt.AbstractRegistration method)
shape (pirt.FieldDescription attribute)
show() (pirt.Deformation method)
(pirt.DeformationGrid method)
(pirt.SplineGrid method)
show_result() (pirt.AbstractRegistration method)
SliceInVolume (class in pirt.interp)
SplineGrid (class in pirt)
T
test_jacobian() (pirt.DeformationField method)
timer (pirt.AbstractRegistration attribute)
V
visualizer (pirt.AbstractRegistration attribute)
W
warp() (in module pirt)
Z
zoom() (in module pirt)
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